PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 624aa    MW: 69498.7 Da    PI: 9.1484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-08531580147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ I r+      +Rt  ++k++w ++
   XP_010520670.1 531 RRPFSVGEVEALVQAVEKLGTGRWRDIKRHAFegaDHRTYVDLKDKWKTL 580
                      568888999**********************999*************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.04E-7340413IPR029071Ubiquitin-related domain
PROSITE profilePS500539.787344413IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.905.6E-4347413No hitNo description
Gene3DG3DSA:1.10.10.604.6E-11525582IPR009057Homeodomain-like
PROSITE profilePS5129417.412526585IPR017930Myb domain
SMARTSM007172.1E-8530583IPR001005SANT/Myb domain
PfamPF002491.3E-5531580IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-15532613IPR009057Homeodomain-like
CDDcd116601.88E-17532582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MYSNRIDCFI GVGNIGGMHL SHKRLEFGDN GYQLPANARA RRSARKKRCF KKNNGDDDRM  60
GAFDLLATVA GSLLLEKGSS QPARYDPIHL SEDKSVAVQN TVRDEFLDEE KPLKAETFCG  120
DNHSKGSSGH CHGLHCGTGT IMRNPGDSLM SEKLENVVEG FGNPGQTDSC KVGNFDQGFK  180
AGIDGDAAVV LEAKPDVVVS LGCNNSSSRA ELPACGKDAS HGSRDVVNLV SSDDDENFLA  240
FSHCSRSQKQ VPRIGDRRIR KIWATRHRKG GLKNADVKPW YSAKRNYCLH HQRNYPIKKR  300
KFFDNISELN SDDYHLPPKM GRGSRTIFSM KCRNGSYVSR DPHVRLRIKS FRVPELFIEI  360
PETATVGSLK RMVMEAVTTL LGGGLRVGLM LQGKKLRDDS KTLLQTGISQ DNTHLDSMGF  420
CLEPSSEAGP IPCDTPKPLT RYPPVDIMHA CDDLPICRAA DLSHVLESDH DSAPSPDVSY  480
GEKNRTDDSR ALFPMEAAVL ASRELTKLAA RPPDRKSKRP EQQQAAQRRI RRPFSVGEVE  540
ALVQAVEKLG TGRWRDIKRH AFEGADHRTY VDLKDKWKTL VHTARIAPQQ RRGEPVPHEL  600
LDRVLTAHSF WSQSQPPAER LLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-485126151101Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291300QRNYPIKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520670.10.0PREDICTED: telomere repeat-binding protein 2-like
SwissprotQ9SNB90.0TRP2_ARATH; Telomere repeat-binding protein 2
TrEMBLR0HIP80.0R0HIP8_9BRAS; Uncharacterized protein
STRINGAT3G46590.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-96TRF-like 2